Upload your FASTA file(s)
You're running BiasAway v3.3.0 with Synthetic k-mer shuffling within a sliding window
Note: The input
file should contain DNA sequences provided using the FASTA format. For large fasta files, we
recommend to use compressed (.gz) files. Do not upload
word processor or office software documents containing sequence
data: instead, make sure that such data is stored in a plain
text file.
Note: This
module may require several hours to run depending on the size
of the sliding window, the step, and the length of the
sequences. We recommend that you provide your email
address to get notified when the job is finished.
What is BiasAway?
The BiasAway software tool is introduced to generate nucleotide composition-matched DNA sequences. It is available as open source code from bitbucket.
The tool provides user with six approaches to generate synthetic or genomic background sequences matching mono- and dinucleotide composition of user-provided foreground sequences:
- synthetic k-mer shuffled sequences
- synthetic k-mer shuffled sequences in a sliding window
- genomic mononucleotide distribution matched sequences
- genomic mononucleotide distribution within a sliding window matched sequences