BiasAway module: Synthetic k-mer shuffling (k)

Upload your FASTA file(s)

You're running BiasAway v3.3.0 with Synthetic k-mer shuffling

Note: The input file should contain DNA sequences provided using the FASTA format. For large fasta files, we recommend to use compressed (.gz) files.


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What is BiasAway?

The BiasAway software tool is introduced to generate nucleotide composition-matched DNA sequences. It is available as open source code from bitbucket.

The tool provides user with six approaches to generate synthetic or genomic background sequences matching mono- and dinucleotide composition of user-provided foreground sequences:

  • synthetic k-mer shuffled sequences
  • synthetic k-mer shuffled sequences in a sliding window
  • genomic mononucleotide distribution matched sequences
  • genomic mononucleotide distribution within a sliding window matched sequences